What we found on the web about Xrate
XRATE is a program for prototyping phylogenetic hidden Markov models and stochastic context-free grammars. It is used to discover patterns of evolutionary conservation in sequence ...
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Get xrate at SourceForge.net. Fast, secure and free downloads from the largest Open Source applications and software directory. xrate is a simple program written in C which ...
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Peter S Klosterman 1, Andrew V Uzilov 1, Yuri R BendaƱa 1, Robert K Bradley 1, Sharon Chao 1, Carolin Kosiol 2,3, Nick Goldman 2 and Ian Holmes 1. 1 Department of Bioengineering ...
next xrate project: WIG tracks via Scheme Friday November 20, 2009 Dart ideas 1 Comment. Next xrate-guile project: add a new smob for ECFG_inside_outside_matrix.
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XRATE is a program for prototyping phylogenetic hidden Markov models and stochastic context-free grammars. It is used to discover patterns of evolutionary conservation in sequence alignments. The program can be used to estimate parameters for such models from "training" alignment data, or to apply the parameterized model so as to annotate new alignments. The program allows specification of a variety of models of DNA sequence evolution which may be arbitrarily organized using formal grammars.

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